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Herein, we report the Triticeae mapped EST database (TriMEDB) – a database providing information on the mapped cDNA markers in barley, along with various annotations, and their homologues in wheat.
Thus, the integration of the available cDNA markers into a semantic knowledgebase that can provide various annotations and generate a unified set of identical markers would definitely be useful for improving the genome-wide map-based approaches.
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The above general definition of a bio-event has been used as the basis for various annotation and extraction tasks [ 19, 31 34].
The availability of rice genomes provides a natural framework to organize and access various annotations generated by functional and genetic analysis [ 6, 11].
A curated annotation was constructed by integrating the various annotation tracks and hand annotating individual genes.
mycoCLAP also provides a list of resources for various annotation tools and ongoing sequencing projects.
Accumulation of information pertaining to the genetic markers in barley and wheat and integration of various annotations related to these markers into a semantic knowledgebase have been effective in facilitating the map-based approach for Triticeae genomics.
Columns "Localization," "Function," "Name" and "Complex" are various annotations we have made to the proteins.
Signal estimates of 3 time points (Day 0, 7, and 10) with biological duplicates were summarized with various annotations supplied by Affymetrix, such as probeset positions, transcript accessions, and probe sequences.
Within FluMap, users can exploit the various annotations tools to analyse isolate-specific pathway interactions and attempt to identify critical molecular events associated with highly pathogenic infections.
The NEIS identifiers are linked to an alias table that contains additional locus nomenclature associated with each locus which is searchable and therefore cross compatible with various annotations; such as specific finished genome locus tags, KEGG EC or common name.
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