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The observations at all other variation sites are given in Table 4. Overall, we found that none of the genotypes were significantly associated with either familial, sporadic or the combined group of prostate cancer.
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In total, 30 HLA-associated amino acid variation sites were listed.
No variation sites were found in the psbA-trnH regions.
The resulting variation sites were manually checked in IGV (Robinson et al. 2011).
The nucleotides from the SNP and InDel variation sites were recorded as marker genotypes for each cultivar.
Only one nucleotide variation site was found at the 27th base, which is the substitution of C/T.
Results suggest that on a local scale, variations in prevalence and diversity among localities are influenced by municipal effluents, but that at a landscape scale annual variations across sites are affected by the hydrological regime and climate.
The variation of these sites are different caused from ligand interaction.
Differences were detected relative to aspect and stand type but variation among sites was also significant.
The level of variation between sites was much higher than the 2% found for Scots pine by Auty et al. ([2013]), but lower than that found in loblolly pine (Jordan et al. [2006]).
The Poisson model was used for amino acid substitution, while rates variation across sites was fixed to "invgamma".
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