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The MHC-resequencing variation analysis we chose resulted in a simple but clear score for comparing genotype variants.
Single-Cell Copy-Number Variation Analysis We assessed allelic dropout (AD) and locus dropout (LD) in single-cell libraries using low coverage WGS, as well as WGS performed on matched bulk samples.
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Combining the results of expression analysis and phenotypic variation analysis in ghd10 plants, we conclude that the ghd10 allele increases primary branch number, panicle length and plant height, and this allele also controls flowering time in response to SD growth conditions.
By applied a chloroplast genome-wide variation analysis in current report, we found the evidence support the independent domestication of Asian cultivated rice, O. sativa L. spp. indica and japonica, which were thought to be originated from O. nivara and O. rufipogon, respectively.
In order to merge the results of different datasets and minimum experimental variation during sensitivity analysis, we employed the large scale meta-analysis method reported in our previous work [ 9].
To this end, we used the DeCyder biological variation analysis (BVA) module and the Cy3∶Cy2 and Cy5∶Cy2 ratios for each individual protein.
We used DNAnexus Nucleotide-Level Variation Analysis to detect SNPs and indels in each proband.
More recently, we integrated long-range structural variation analysis from Optical Mapping and short range variation analysis from DNA sequencing data to comprehensively characterize variation in a multiple myeloma genome at different stages of disease progression [ 10].
For TP1 we also performed differential copy number variation analysis.
In this study, we report the first genome-wide variation analysis of the nematode with an aim to obtain a full picture of its diversity.
We performed re-sequencing and genome-wide variation analysis of 7302R using the Solexa sequencing technology.
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