Sentence examples for variants of parameters from inspiring English sources

Two variants of parameters for Blast searches were used: 1) default ones with changes in the filtering and masking part low complexity regions and mask for looking table only (soft masking) switched on and 2) word size 2, amino acid substitution matrix BLOSUM45, gap opening cost 15, gap extension cost 2, and the same filtering options as above.

An alignment error profile generated by RefAligner is used with the estimated genome length to calculate default assembly parameters; and the eight other scripts that include variants of these parameters.

Using gold-standard data sets compiled from the emerging large-scale functional genomics and proteomics experiments, an increasingly wider range of reference genomes and a mixture of variants and parameters [ 10, 11], these 'genome-aware' sequence analysis methods and in particular gene cluster/fusion detection, have yielded an impressive level of performance and accuracy [ 12].

For the LSA, SOM, and topic modeling approaches, there are many variants in terms of parameter space that can be chosen.

There is no evidence that regularisation improves the planewave expansion method, but with the correct choice of parameters both variants can be used efficiently without adding significant errors.

On the other hand, the two variants of the IFPE provided parameter estimates within the time-limit, which are summarized in Table 4.

The top of Fig.  3 shows the single parameter variants of the designs on the standard dose level set for b = 0.5 as squares, b = 1 as solid dots and b = 2 as circles.

We explored the impact of variant-calling parameters and determined the effects of EBV transformation and culturing on the exome.

Parameter selection: Each alignment and variant calling program has a range of parameters, which can be set by the user.

Indel detection accuracy is highly dependent on the bioinformatics data processing pipeline and the selection of parameters within the variant calling software [ 6].

The univariate analysis revealed no significant association between the levels of individual survivin splice variants and clinical parameters of RA (all r <0.3; data not shown).