When equal amounts of HDL2 and HDL3 are present, all of the apoA-I variants partition preferentially to HDL3.
The homokaryotic organization implies that the nuclear polymorphism reported in these organisms is the result of orthologous allelic variants partitioned between chromosomes (i.e. polyploidy) or paralogous copies within a chromosome, while in the heterokaryotic state, different allelic variants could be evenly partitioned among distinct nuclei, or be present in a group of complementary nuclei.
While the fragment partitioning phase aims to group rows of the variant matrix into two partitions, C1 and C2, fragment merging is intended to combine the fragments residing in each partition, through a SNP-wise consensus process, and form two haplotypes h1 and h2 associated with C1 and C2, respectively.
In fact, the partition function variant of RNAalifold computes when both the bonus term for sequence covariation and the tolerance for nonstandard base pairs are set to 0. A local version can be made if we only consider partition functions on respective subsequences, but is beyond the scope of this work.
For each invocation of the scheme, the variant services will be partitioned based on the equivalence of their results.
To realize this concept while exploiting the benefit of fast frequency-domain convolution, a partitioned-block variant of the SA-HGMs, denoted as PBSA-HGM, has recently been introduced in [22]3.
Obviously, such a process cannot partition the variants into specific sub-genomes, but combining it with the progenitor comparison approach and more automated methods of haplotype reconstruction from mapping assemblies would significantly extend the utility of the approach in this respect.
In this article, we present a novel variant of Crochemore's partitioning algorithm for weighted sequences, which requires optimal O (n log n ) time, thus improving on the best known O n 2 -time algorithm (Zhang et al., 2013) for computing all repetitions in a weighted sequence of length n.
For nascent glycoproteins with N-glycans late in the sequence (e.g. the α1-antitrypsin variants analyzed here), partitioning in alternative chaperone pathways is more likely to occur [8].
The set packing problem has received less attention than the covering and partitioning variants.
Another variant appears with non-uniform partitioning of the biometric vectors in blocks.
