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After the alignment, variant detection was performed to call SNPs.
& Nickerson, D.A. Systematic assessment of copy number variant detection via genome-wide SNP genotyping.
Garrison, E. & Marth, G. Haplotype-based variant detection from short-read sequencing.
We next evaluated the performance of somatic variant detection by three-platform sequencing.
Our final data showed somatic variant detection from FFPE for clinical decision making is possible.
Koboldt, D.C. et al. VarScan: variant detection in massively parallel sequencing of individual and pooled samples.
Higher values denote poor coverage uniformity, which directly impacts variant detection.
As a result, iDES-enhanced CAPP-Seq facilitates noninvasive variant detection across hundreds of kilobases.
Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping.
de Vree, P.J. et al. Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping.
Walker, B. J. et al. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
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