Suggestions(5)
Exact(10)
We assume that the phylogenetic relatedness within variant clusters is greater than that between clusters.
A comparison with existing ESTs indicates even more extensive gene variant clusters in O. marina CCMP1788.
In both cases, a large number of variant clusters were not identifiable by BLAST searches against Genbank databases and no obvious functional class of genes appeared to dominant the most abundant variant clusters.
These windows were considered as variant clusters likely due to misalignments and were thus ignored for downstream analysis.
For the most extensive gene variant clusters, contigs were predominantly highly overlapping and biased toward the 3' end of mRNAs (e.g. Figure 4c).
Instead, several variant clusters were significantly enriched (q-value ≤0.05) in genes coding for exported proteins and two represented mature gametocyte clusters.
Similar(50)
The largest gene variant cluster for which both strains possessed multiple gene variants was a type II rhodopsin gene.
Phylogenetic analysis of the complete genome of CAV variant showed that CAV variant clustered to a clade with the CAV strains in chickens).
The 96 proprietary samples were included in the analysis of the screening array for training of the variant clustering algorithm, but not in further analyses presented here.
Genotype calling algorithms fine-tuned for rare variant clustering have recently been developed and hold the promise of helping to overcome many of these issues.
To ensure that each locus was represented only once in the orthologous gene group analysis, only the longest predicted protein from each variant cluster was used.
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com