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The r2 or fraction of the variance attributed to the BDNF gene for the LOAD cases was.046.046
The variance attributed to the epistatic effect was 27.9 ml2/m4, which accounted for 73.8% of the interaction variance (37.8 ml2/m4), 66.4% of the genetic variance (42.0 ml2/m4) and 4.4% to the total phenotypic variance (628 ml2/m4).
The author gives the empirical procedure to determine the threshold and in practice, this approach is more robust in presence of non-stationarity and when the factors are weak or when the proportion of variance attributed to the idiosyncratic components is larger than the variance of the common component.
Directional female mate choice is theoretically expected to deplete additive genetic variation (i.e. variance attributed to the average effect of substituting one allele for another) in male traits, and multiple hypotheses have been proposed to explain why this is not actually observed in nature [52].
Interestingly, the variance attributed to the [P]ext treatment varied between the root traits.
These reductions in marker effects due to spurious associations may result in an increased variance attributed to the polygenic effect.
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The proportion of genetic variance that each SNP contributed was calculated by dividing the genetic variance attributed to that SNP by the posterior mean estimate of the genetic variance of the trait.
The sum of the estimated variances attributed to the leading SNPs for each haplotype block that contained significant haplotypes (i.e. the SNPs with the lowest P-value for a significant haplotype) accounted for 2.7% of the total genetic variance.
Estimates of NeV were corrected for sample size variation by subtracting the expected variance attributed to sampling from the observed temporal variance in allele frequencies (Waples 1989; eq. 12).
The first two PC were plotted and annotated by country to determine the degree of genetic differentiation across the populations and the variance explained by the PC1 was calculated as the variance attributed to PC1 divided by the total variance.
Heritability estimates were calculated as the percent of variance attributed to strain using the restricted maximum likelihood (REML) variance components with strain as a random effect (JMP 9, SAS Institute Inc., Cary, NC, USA).
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