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In this race/ethnic group, rs12762303 has a minor allele frequency of 15% and is tightly linked to variation at the SP1 variable tandem repeat promoter polymorphism.
The LPCoLN genome carries three variable tandem repeats in pmpG6.
*MLVA, multilocus variable tandem repeat analysis; MLST, multilocus sequent type; MT, MLVA type; ST, multi-locus-sequence type, N, no.
The use of multilocus variable tandem repeat (VNTRs) is a well established genotyping method of many pathogenic bacteria.
Variable tandem repeats in several taxa have been considered as possible sources of gene regulatory variation (reviewed in [ 50]).
To more fully understand the epidemiology of cholera in Kenya, we analyzed the genetic relationships among 170 Vibrio cholerae O1 isolates at 5 loci containing variable tandem repeats.
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These conclusions are based on broad MLST analysis as well as analysis of four hyper-variable tandem repeats located throughout the C. gattii genome.
Genetic relatedness among C. difficile ribotype 176 isolates was achieved using multi-locus-variable tandem repeats-analysis (MLVA).
Multilocus-variable tandem repeat analysis (MLVA), however, has been reported to be useful in differentiating V. cholerae O1 strains in various rural communities and within households (11 – 14 ).
Table 1 Variable number tandem repeats A variable number tandem repeat occurs in DNA when a pattern of one or more nucleotides is repeated, and the repetitions are directly adjacent to each other.
VNTR: Variable number tandem repeats analysis; MLVA: Multiple locus variable number tandem repeats analysis.
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