Sentence examples for values for alignment from inspiring English sources

We tested a number of parameter values for alignment and all analyses presented here use a value of n = 0.05, where n is the fraction of missing alignments given 2% uniform base error rate.

The distribution of rate values for alignment positions by AIR-Identifier was similar, although intron regions were significantly more highly variable than all three exon partitions, and variability of tRNA loci was significantly higher on average than rRNA and exon regions with the exclusion of ycf 1 and ycf 2 (Additional File 3).

Using the separate RPKM values for alignment to the A genome-cured and C genome-cured versions of each unigene as paired values for each of the four replicates of B. napus 1 and B. napus 2, we were able to identify homoeologous pairs of genes for which the A and C genome versions show significant differences in transcript abundance.

We used the RPKM values for alignment to the A genome-cured and C genome-cured versions of each unigene as paired values to identify homoeologous pairs of genes for which the A and C genome versions showed differences in transcript abundance across all five cultivars.

Below each superposition, are shown the alignments, PB scores and SDM values for alignments, bSVRs and aSVRs.

The scores for the aligned category by image classification are compared with a normalised value for alignment (coherency) using the OrientationJ plugin on ImageJ.

As these sequences are neither repetitive nor low in complexity in the regions covered by the HMM, the consistently low E-values for alignment between the two families predicts substantial sequence similarity between NHases and NHLPs.

A redundant set of 430,000 alignments was obtained, since the tomato target sequences frequently produced numerous multiple matches of various scores, unless a threshold value for alignment quality/magnitude was set.

In both cases the E value for alignment with See2 is better than 1e-13 and for the C13 peptidase superfamily conserved domain E scores were of the order of 1e-80.

MUMmer does not report P-values or E-values for alignments, nor adjusts scores to account for composition.

Given the broad distributions of percent identities, alignment lengths and e-values for alignments of type 1 peptides, it seems reasonable to expect that biases in the databases affect these distributions, further confounding assignments based on alignment alone.