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Table 2 Selected confidence value thresholds in the simulations.
The results suggest that smaller value thresholds slightly decrease the computational efficiency (about 10%).
For instance, change of color on change of value, change of shape on change of value thresholds.
First, the genome was divided into bins defined by GC-content value thresholds.
Bonferroni correction was applied to take multiple testing into account and p value thresholds were set at 0.002 (0.05/23).
Bonferroni correction was applied to determine the p value thresholds.
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Figures 2, 3 and S4 display GO term distributions in transcript lists determined with multiple FDR-value thresholds.
Figure 3 shows that when more stringent p-value thresholds are used to define GWAS hits, the Bayes Factors increase.
The E-value thresholds were also set at 1e-5.
Scores were calculated for the seven P-value thresholds.
The sensitivity decreases for lower e-value thresholds, whereas the accuracy decreases with increase in e-value thresholds.
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