Sentence examples for value of alignment from inspiring English sources

Protein function assignments based on postulated homology as recognized by sequence identity or significant expectation value of alignment are used routinely in genome analysis.

With the TFe database, we annotated a chromatin motif using the best E-value of alignment and homology > 80% between the chromatin motif and TFBS sequences.

With the binding motifs, we annotated a chromatin motif using the best E-value of alignment and homology > 80% between the chromatin motif and binding motif sequences.

MOST+ and HOMER identified 11 of 13 major motifs (with the major motif ranked the first in results) with significant e-value of alignment whereas DREME reported 10 motifs (Table 2).

All Z values of Alignment A are greater than 4.3 for all comparisons except when the Kir family is compared to the non-Kir's, for which the values range from 2.2 to 3.9.

We applied the fluidity pipeline detailed in Figure 3 and restricted our analysis to gene family assembly values of alignment identity (i) and coverage (c) from 0.5 to 0.8 in increments of 0.02 (see Methods).

To estimate opened gaps in a structural alignment, the value of aligned ratio of a binding segment is measured.

E-value, minimum e-value (probability of alignment occurring by chance) recorded for a hit.

Columns 3-5: 3) Times: running time under each word width K; 4) Motifs predicted: number of unique motifs found by each schema; and 5) E-value: the lowest e-value of alignments between a major motif found by each schema and motifs in mouse motif database.

The default settings of the software (i.e. minimal identity and E values of alignments) and the sequence databases can be easily changed by the users in a configuration file if they desire to query different organisms or focus on genomic clones.

An estimate of the expectation value of an alignment provides a good assessment for whether the two aligned proteins are homologous [ 17].