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This database design allowed more rigorous data edits by comparison with the production data and improved MGS identification (ID) rate by utilizing pedigrees from the production records.
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SHAPEIT (47) version 2 was used for pre-phasing because it can partially utilize pedigrees to improve the phasing for related individuals.
As an example, I utilize data from 1,628 Mexican American individuals who are members of large extended pedigrees from the Genetics of Brain Structure and Function Study.
Subjects for this study consisted of 7669 adult members from 1919 different pedigrees from the GRFOCR.
Potential participants were identified from charts and pedigrees from the Lund Oncogenetic Clinic.
It utilizes all the information from the pedigree, takes selection into account and, under the infinitesimal model, gives unbiased estimates of the base population [ 20].
We screened 637 BP-pedigrees from the NIMH Genetic Initiative and gave priority to 46 pedigrees.
To demonstrate the fast inference of INLA, we created a large pedigree from the existing house sparrow pedigree by merging 28 identical pedigrees and simulated data based on this pedigree with n p = 100,072 individuals.
Therefore, recombination maps were calculated based on the information from 573 animals of the ILL pedigree, 247 from the UIUC pedigree, 204 from the ROS pedigree and 1298 from the USDA pedigree.
Traditional methods for making breeding decisions to reduce the level of inbreeding (by increasing Ne) utilize only pedigree information, which describes the expected relationship among individuals.
Genome-wide linkage studies in extended pedigrees from Iceland led to the identification of PDE4D and ALOX5AP.
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