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Pedersen and colleagues recently developed a computational method called EvoFold, which utilizes the algorithm of phylogenetic stochastic context-free grammar (Phylo-SCFG) to detect conserved structured RNAs in the genome [ 34].
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Next step utilizes the algorithms of RST to mine rules from the decision table.
Secondary structure was evaluated utilizing the algorithm of Wang et al. ([2009]), present in antimicrobial peptide calculator web site (http://aps.unmc.edu/AP/prediction/prediction_main.php).unmc.edu/AP/prediction/prediction_main.php
To determine the size and shape of an object, we calculate the minimal bounding box p BB for the object mask utilizing the algorithm described in Toussaint [ 35].
Bioinformatic analysis utilized the algorithm of Targetscan [ 24] showed that BCL6 mRNA contains a 3'-UTR element complementary to the miR-339-5p miR-339-5p miR-339-5p
Next, each candidate loop is inserted into the target site by computing the optimal superposition of the anchors of candidate loop and target site utilizing the algorithm by Kabsch (1978).
Each cover layer is accompanied by metadata documenting error estimates based on a cross-validation technique utilizing the algorithms and training data for each mapping zone (MRLC 2009; Homer and others 2007).
RScan is based on SSAHA algorithm [ 21], which utilizes the hashing algorithm to perform a fast search for large genome databases, and the Smith-Waterman algorithm [ 22], which is a basic local alignment algorithm.
The algorithm utilizes the familiar EM algorithm on multiple bootstrapped samples of the original incomplete data to draw values of the complete-data parameters.
Iterative solution of velocity field utilizes the SIMPLE algorithm.
The Delsa Nano software utilizes the CONTIG algorithm to determine particle size distributions, based on an inverse Laplace transformation.
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