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The GCB-approach follows the classical and proven concepts of scoring-functions as e.g. utilized for sequence comparison [ 46, 47] or the identification of horizontally transferred genes [ 48].
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Consequently, the Greengenes web service [ 13] utilizes Simrank as the search engine for sequence comparison and taxonomic classification of arbitrary user sequences against a reference data set.
His research interests are in molecular evolution and computational tools for sequence comparison.
We reported here a new method for sequence comparison.
This approach utilized both sequence comparison and fold recognition methods.
Vista was used for sequence comparisons [ 58].
This trend may be due to the models of sequence evolution utilized for estimating sequence divergence.
Four driver mutation databases were utilized for the comparison, including Cancer Gene Census (CGC513 48, Bert Vogelstein12549, SMG12750, and Comprehensive 43551 database.
A single domain PSSM database is utilized for pairwise comparison.
Only patient samples corresponding to disease quiescence were utilized for this comparison with HC.
A supervised hierarchical cluster algorithm (dChip, Harvard, MA) was utilized for this comparison.
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