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To determine the likelihood that the genes determined from microarray analysis to be regulated by Pi and/or pho7 would also have promoters that contain at least one Pho7 binding site we utilized a hypergeometric test.
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Both analyses use a hypergeometric test for a p-value computation.
A hypergeometric test with subsequent correction for false discovery rate (FDR) when using multiple testing was applied.
Gene ontology analysis was carried out using publicly available on-line statistical package (FUNC, http://func.eva.mpg.de/) using a hypergeometric test.
To identify statistically significantly overrepresented GO categories, a hypergeometric test was performed followed by FDR correction [37].
Enrichment P-values were calculated using a hypergeometric test.
P-values were calculated by a hypergeometric test.
All enrichment analyses were performed using a hypergeometric test.
With the p-value from the U-test, we further calculate a hypergeometric test p-value.
For each category we tested departure from the 1.6 1 ratio (Col Cvi) using a hypergeometric test.
P-values were determined by a hypergeometric test with Benjamini-Hochberg multiple-test correction.
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