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It is worth noting that MAST is not typically used with TRANSFAC PWMs, and usually, multiple PWMs are used for each TF, and so the results cannot be used to make inferences about how well MAST performs together with MEME.
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Real world problems have usually multiple objectives.
Lesions are usually multiple and bilateral.
These include (1) investigating the effect of excluding paralogous pairs with low expressions, (2) using alternative measures of expression divergence, and (3) using several way of aggregating multiple probe data and multiple PWMs.
We believe this is partly due to the usage of combined STAT-related PWMs which has the capability to enhance the performance of MotifLocator, albeit less than the enhancement for STAT-Scanner, with combined data derived from multiple PWMs (Figure S4).
Since the building time is linear in the size of the input sequences, it is only advantageous when searching the sequence set with multiple PWMs (see table 1 and supplementary material, text S1, for speed comparisons).
The first one is a generative approach that makes use of multiple PWMs to model each peptide class.
The graph of the multiple PWMs Markov chain of the hidden states implemented in the study is depicted in [see Additional file 1].
Tubercular fistulae are usually multiple and recurrent [ 33- 36].
There are usually multiple ways out from a cave.
We usually offer multiple sessions in multiple locations to catch as many people as possible.
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