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This can be useful when comparing the same biological samples, but using two different gene sets.
Though these correlation coefficient values are not as high as one would expect them to be, it has to be remembered here that the two studies were performed using a completely different set of patients and volunteers using two different gene chips.
The HubDetector is evaluated in silico and validated using two different gene expression datasets from yeast.
In order to identify additional mutations in GPHN, we performed targeted resequencing of GPHN using two different gene panels.
The RNA from the tissue was extracted and examined using two different gene chips of 39,000 and 10,000 genes, respectively.
We also observed a significant overlap with 34 genes shared across the TG modules of all three sets of samples robust enough to be detected using two different gene expression approaches, microarrays and RNAseq.
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In this case, the authors used P. falciparum genes that had been automatically predicted by the PlasmoDB consortium using three different gene prediction programs (Glimmer, Gene finder and FullPhat – [18]) and scanned their corresponding amino acid sequences for the presence of seven TMs using HMMTOP 2.0.
Chen et al. [ 21] recovered a polytomy of Lutjanidae, Scaridae, and Haemulidae using four different gene regions.
We repeated this three times, using three different gene sets: 1) All genes in the data, 2) Common genes appearing in all Matisse runs, 3) Total genes appearing at least once in Matisse runs.
We use two different gene expression datasets in the two analyses.
In organisms that use both cofactors, it might be necessary to use two different gene families in order to independently control the production of these molecules.
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