First we constructed and bootstrapped an unconstrained tree using two alternative heuristic searching algorithms; this found trees showing identical topology with marginal differences in branch support.
Upstream sequences were extracted, and common sequence motifs putative cis-regulatory motifs were sought using two alternative implementations of Gibbs-sampling algorithms, AlignACE and MEME [24], [25], as described in the Materials and Methods.
Figure 5 Segmentation results by using two alternative segmentation methods.
3′UTRs of a subset of genes (n = 35) involved in regulating water salt balance in kidneys and associated with Mendelian hyper- and hypotension (Table S1), was screened for miRNA binding sites using three alternative target prediction algorithms: Targetscan [20], miRanda [21,22] and picTar [23,24].
But to handle RSS fluctuations, they used two alternatives: a heuristic preprocessing algorithm and a responsive universal based on trim-like operation to remove peaks and drops and on a modified standard deviation-based technique applied to the last received RSSI values for every access point.
To achieve the best possible performance for the semi-online problem, we use a combination of LPT, together with two alternative algorithms which we design.
The same paired analysis was performed using Partek Genomics Suite software (Partek Inc., St Louis, MO, USA), starting from CEL intensity files and applying the two alternative algorithms Hidden Markov Model (HMM, the same used by CNAG) and Genomic Segmentation (GS).
Thereunto, we design two alternative algorithms, according to the PLS algorithm used.
Next, we present our contribution: two alternative algorithms to solve the significant interval search problem by making use of the exact minimum attainable P-value; one based on Tarone's method and another on WY permutation testing.
Two alternative algorithms provided lower specificity.
