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Median ED in clades of 60 species is 88% of the total accumulated using the whole tree (n = 10, figure 2).
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A review by Wall (2012) showed reductions in site productivity of 31 39% after clear-felling using the whole-tree harvesting technique.
A ML tree constructed using sequences of three mitochondrial protein coding regions was similar to the ML tree using the whole mitochondrial genome sequence (not shown).
In the phylogenetic convergence test mentioned above, a relatedness tree, constructed using the whole genome data is used to identify genes that accumulate frequent mutations synchronous with the acquisition of the phenotype of interest.
Ln L 0 was computed by assuming that the first 630 bp and the last 1078 bp shared the ML tree obtained using the whole data set (albeit each partition was allowed to evolve under different model and branch-length parameters).
The tree topology was similar to that obtained using the whole dataset of Snail related proteins.
Using the whole beast?
Therefore, a constant EF value of 1.545 was used to calculate the whole tree biomass for all 12 stands in this study.
The estimation of the global dN/dS ratio across the whole tree using the one-ratio branch model (M0) resulted in a ω value of 0.46 showing that AMBN is globally evolving under purifying selection in mammals (Table 1).
We then used the whole set of trees from BEAST to construct a strict consensus tree.
Years were analyzed separately in all statistical tests, because of the changed sampling protocol between years (surveying the whole tree in 2002, using time counts in 2003).
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