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We compared the abundance of CNSs at various length categories using the whole coding threshold.
The results using the whole coding threshold and the skip3 threshold are presented in supplementary table S3, Supplementary Material online.
Using the whole coding threshold and the skip3 threshold, as well as minimum length of 100 bp, we searched for the lineage common CNSs.
Out of 52,124 primate unique CNSs retrieved using the whole coding threshold, 49,888 (96%) are single copies with no duplicates.
We first randomly retrieved noncoding sequences of the same number and lengths as the primate unique CNSs retrieved using the whole coding threshold.
Primates have the highest number of common CNSs (861,183) compared with 148,848, 491,078, and 257,051 CNSs in rodents, carnivores, and cetartiodactyls, respectively, using the whole coding threshold.
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This requires that the index encryption uses the whole code table instead of subgroups of code words of the same length.
Phylogenetic analysis of the 5' region of the Seg-3 which encodes part of the carapace domain 7-2977 aa) gave almost identical topologies and bootstrap support with those inferred using the whole Seg-3 coding region.
Since the internal software class attribute metrics are computed using the whole class source code, the potential testing effort predicted by the internal software class attribute metrics in these cases will not match the actual effort spent for writing these partial tests.
The variation in sub-categories highlights the importance of using the whole VR cluster of codes across age and gender groups and different settings.
Table 1 shows the average value of nucleotide diversity observed in the different functional classes, both using the whole sequence and only the coding sequence.
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