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Clustering was performed using the weighted pair linkage and Manhattan distance methods with no scaling.
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We applied hierarchical clustering to both axes, using the weighted pair-group method with a centroid average as implemented by the program CLUSTER (Eisen et al, 1998).
Agglomerative hierarchical clustering was performed using the Weighted Pair-Group Method with Arithmetic mean (WPGMA, Spotfire Array Explorer, v. 8, Spotfire Inc., Cambridge MA) using Euclidian Distance.
We calculated eight types of cost-efficiency index with different profiling criteria for each medical clinic and investigated the agreement between the decile rankings of each index pair using the weighted kappa statistic.
The predicted compound pairs were filtered using the weighted Jaccard coefficient >= 0.9, and the connected subnetworks were extracted from the top 10,000 predicted pairs.
The system then used the weighted scores from paired comparison and a genetic algorithm (GA) to generate new urban landscapes.
Agglomerative clustering using the un-weighted pair group method with averages (UPGMA) was performed using the Agglomerative Nesting (AGNES) function in the R statistical environment [ 52].
Cluster analysis among the 18 rice genotypes was based on Nei and Li similarity coefficient [ 49] by using the un-weighted pair group method analysis (UPGMA) in TREECON [ 50] software package.
Cluster analysis among the 36 genotypes of Saccharum species, varieties and related genera was based on Nei and Li similarity coefficient [ 47] using the un-weighted pair group method (UPGMA) in PowerMarker Version 3.0 [ 48, 49] software.
Second, the weighted pair graph is used to transform an SBCN into a deterministic finite automaton (DFA).
For results combinations, we use the weighted Z-method [17].
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