Sentence examples for using the wag model from inspiring English sources

From this alignment, a maximum likelihood analysis using the WAG model [24] was conducted using RAxML [25] with a bootstrap analysis [26] based on 100 replicates.

For the clade containing type II AFPs and fish skin mucus lectins, a separate ML tree was constructed using the WAG model, and a bootstrap test with 100 replications has been applied to test its robustness.

A new ML tree was constructed using the WAG model of amino acid substitution, followed by the parametric approximate likelihood ratio test (aLRT) to assess the significance of individual branches.

These were used for phylogenetic reconstructions and non-parametric bootstrap using maximum likelihood (ML) method implemented in phyml (Guindon and Gascuel, 2003) using the WAG model plus gamma and invariant (WAG+Γ+I) as the best-fit model of the viral DdDp evolution that was determined using the Bayesian information criterion (BIC) implemented in ProtTest version 1.2.6 [34].

The congruence of the tree inferred by the CAT model and of the distribution of guanidinoacetate N-methyltransferase strongly argues that the tree inferred using the WAG model is biased by an LBA artefact, pointing towards a reduced sensitivity of the CAT model to this artefact [14], [20].

Bayesian tree search was performed with PhyloBayes v. 3.2 [ 39] using the WAG model.

From the 32,000th generation MrBayes used the Wag model [ 66].

From the 1000th generation, MrBayes used the WAG model (Whelan and Goldman, 2001).

The resulting simulated sequences were used to create a maximum likelihood tree using the WAG evolutionary model.

ML analysis was done with bootstrapping (100 replicates) using the WAG evolutionary model, assuming four substitution rate categories, and using the program defaults for estimating the gamma distribution parameter and optimization of trees.

This analysis was done using the WAG substitution model [ 49 ] and gamma correction to account for among site rate variation.