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Pairwise compound similarity plots were calculated in R using the vegan package [45].
ANOVA and Pearson correlation coefficients were calculated using the vegan package of R [46].
Mantel tests were performed using the vegan package [58].
Inverse Simpson's diversity index [51] and Pielou's evenness [52] were calculated using the vegan package [43].
All analyses were performed using the Vegan package in R [64].
Non-metric multidimensional scaling (NMDS) and multi response permutation procedure (MRPP) was performed using the vegan package.
Similar(33)
We used the vegan package [35] in the R statistical software [36] to carry out these analyses.
The Shannon diversity index (H) was calculated based on % cover of each species, using the Vegan 1.8 6 package for R [44].
Partial Mantel correlations were performed using the Vegan R package.
Significance was assessed by permutation tests using the Vegan R package [ 78].
They're using the vegan frame!
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