Sentence examples for using the upgma method from inspiring English sources

The phylogenetic tree was constructed by Geneious 5.4.6 software and evolutionary history was inferred using the UPGMA method.

The phenogram from cluster analysis using the UPGMA method represented four groups with an R value of 0.87.

The MIR-max and EA-based approaches are applied to the South Australian combined season riffle AusRivAS data, and the results obtained are compared with those obtained using the UPGMA method.

Evolutionary relationships of Kocuria sp. DAB-1Y 16S rRNA gene partial sequence (accession number KJ811539) and the evolutionary history were inferred using the UPGMA method (Sneath and Sokal 1973).

The analysis involved 12 nucleotide sequences Fig. 6 Neighbor-Joining phylogenetic tree of the of partial 16S rDNA sequence of Staphylococcus sp. DAB-1w (the query sequence with accession number KX986577) made using MEGA 7 (Kumar et al. 2016), and the evolutionary history was inferred using the UPGMA method (Sneath and Sokal 1973).

Nucleotide sequence alignment and identity was analysed by using Clustal X (1.8.1) software (European Bioinformatics Institute).The phylogenetic tree was constructed by Geneious 5.4.6 software and tree build by using the UPGMA method and the genetic distance calculated using Tamura-Nei method (Sneath and Sokal 1973).

The genetic distances among local variety groups and wild populations were calculated, and unrooted dendrograms were constructed using the UPGMA methods and the program TreeView (Page 1996).

The phylogenetic tree was constructed using the UPGMA clustering method with distance calculation using the Poisson correction for evolutionary rate by Molecular Evolutionaty Genetics Analysis (MEGA version 4.1).

A dendrogram was constructed using the UPGMA clustering method and bootstrap analysis with 1000 re-samplings implemented in NTSYSpc v. 2.2 [ 56].

A second dendrogram (not shown, as the relationships are similar) was obtained only for the species belonging to the Triticeae tribe, using the UPGMA clustering method, as the divergence between these species was quite recent and therefore the molecular clock could be assumed.

A thousand FST and RST distances were then clustered using PHYLIP (PHYlogeny Inference Package) v3.66 using the UPGMA tree drawing method and unrooted consensus trees were built with the PHYLIP executable "Consense".