Sentence examples for using the upgma algorithm from inspiring English sources

Similarity of the band pattern profile was established using the Pearson coefficient and dendrograms were generated using the UPGMA algorithm.

The chromosomal DNA restriction patterns were interpreted with help of the GelCompar™-Software (version 4.1, Applied Math) using the UPGMA algorithm with Dice coefficients.

Cluster analysis was performed by pairwise calculation of the Pearson correlation; the similarity matrix was clustered using the UPGMA algorithm with optimisation: 0%, position tolerance: 1%; uncertain bands were ignored.

Communities were clustered into Newick-formatted trees using the UPGMA algorithm implemented in Mothur.

Given the MSA, the tree's topology is obtained using the UPGMA algorithm [ 30].

A phylogenetic tree was then computed using the UPGMA algorithm (21) as implemented in the Quicktree program (22).

The tree was made using the UPGMA (Unweighted Pair Group Method using Arithmetic averages) algorithm and Poisson-corrected amino acid distance was used.

Cluster analysis was performed on MEGA v3.1 software [ 39] using the UPGMA (unweighted pair-group method with arithmetic average) algorithm and 500 bootstrap trials.

Clustering was performed using the UPGMA (Unweighted Pair Group Method with Arithmetic Mean) hierarchical algorithm with GeneANOVA software.

The phenogram from cluster analysis using the UPGMA method represented four groups with an R value of 0.87.

The dendrogram was drawn from allelic profile data using the UPGMA (unweighted pair group method with arithmetic mean) method.