Sentence examples similar to using the upgma Inference from inspiring English sources

A thousand FST and RST distances were then clustered using PHYLIP (PHYlogeny Inference Package) v3.66 using the UPGMA tree drawing method and unrooted consensus trees were built with the PHYLIP executable "Consense".

The phenogram from cluster analysis using the UPGMA method represented four groups with an R value of 0.87.

The dendrogram was drawn from allelic profile data using the UPGMA (unweighted pair group method with arithmetic mean) method.

The genetic distances among local variety groups and wild populations were calculated, and unrooted dendrograms were constructed using the UPGMA methods and the program TreeView (Page 1996).

Evolutionary relationships of Kocuria sp. DAB-1Y 16S rRNA gene partial sequence (accession number KJ811539) and the evolutionary history were inferred using the UPGMA method (Sneath and Sokal 1973).

The phylogenetic tree was constructed using the UPGMA clustering method with distance calculation using the Poisson correction for evolutionary rate by Molecular Evolutionaty Genetics Analysis (MEGA version 4.1).

Dendrograms using secondary distances were obtained using the UPGMA routine in Mega 3 [ 33].

A phenogram was constructed from the aligned sequences using the UPGMA method from the ClustalX program.

The phylogenetic tree was constructed using the UPGMA method implemented in STAMP [ 42].

Communities were clustered into Newick-formatted trees using the UPGMA algorithm implemented in Mothur.

A phylogenetic tree was then computed using the UPGMA algorithm (21) as implemented in the Quicktree program (22).