Sentence examples for using the uniprot database from inspiring English sources

InterPro [25] domain annotations were retrieved for all protein targets using the Uniprot database [26].

Finally, InterPro domain annotations were retrieved for all protein targets using the Uniprot database (Additional file 2: Supplementary Information SI 2).

Using the Uniprot database (http://www.uniprot.org), we identified the number of TM helices present in TMD dimers, together with the pI values of the SBPs in 35 importers (Table S1).

Mascot was applied, using the Uniprot database, to determine proteins present in the samples.

The CG-Pipeline annotates genes using the UniProt database (27) and InterProScan (28).

A unigene blast was performed using the uniprot database and the annotated GO function.

Further analysis was performed to identify the biological processes involving the DEGs using the UniProt databases [ 33].

Sma3s uses the UniProt database in plain-text format files (file.dat), corresponding to the taxonomic division of the organism under study, as its main data source.

The Streptococcus genes were compared with all bacterial proteins from the Uniref90 database using BlastP, and the GO categories of matches with E values < 10−5 were obtained using the uniProt GOA database.

De novo sequencing of fractionated proteins was performed with Peak Studio 6.0 Software using the Uniprot Swiss database for Homo sapiens, with a false discovery rate of <1%.

CID spectra interpretation was performed with the Phenyx software (GeneBio) using the Uniprot Drosophila protein database, release 54.0.