Sentence examples for using the trinity utility from inspiring English sources

Analysis was performed to determine known protein domains in the Pfam database using the Trinity utility TransDecoder [ 51].

To evaluate the extent of cross-contamination in our libraries, we mapped the cleaned reads used to produce each assembly against that assembly using the Trinity utility align_and_estimate_abundance.pl (Haas et al. 2013).

We then estimated the abundance of each transcript in each assembly by mapping and counting reads from each library against the assembly produced from those reads using the Trinity utility align_and_estimate_abundance.pl.pl

The clean reads of the three libraries were de novo assembled using the Trinity Program (V 2.2.0) with default parameters (Grabherr et al. 2011).

The transcriptome sequences were assembled using the Trinity program.

Lactate secretion was determined using the Trinity Lactate Kit (Trinity Biotech, Jamestown, NY, USA) according to the manufacturer's protocol.

The nine Illumina RNASeq data sets were assembled with Trinity [ 28] 2012-01-25p1 using trinitynity.pl wrapper and options '--bflyHeapSpace 15G' and '--no_meryl'.

De novo assembly of the clean reads was performed using the Trinity program [ 55].

All the reads were then assembled into 66,815 unigenes using the Trinity program [ 82].

Reads were de novo assembled into contigs using the Trinity suite [ 19].

High-quality clean reads were assembled de novo into contigs using the Trinity program.