Sentence examples for using the trinity transcriptome-assembly from inspiring English sources

Using the Trinity transcriptome-assembly software, a total of 120,426 assembled transcripts were obtained from seven sample libraries (untreated control, defoliation, and simulated grazing).

Gene expression values for T. amboinesis were generated by mapping the reads used in the assembly to the Trinity transcriptome assembly (representative isoforms) using Bowtie2.

The raw assembly of the C. capitata transcriptome was constructed using the Trinity assembly pipeline with all filtered reads from all eighteen libraries pooled into one dataset.

We obtained 108,502 assembled unigenes using the Trinity de novo assembly method and identified numerous potential cold sensing transcription factor genes and various key signal transduction components at the transcriptome level.

> The assembly of the transcriptome from the leaf, root, seedling, flower, secondary xylem of teak branch and stem was performed using the Trinity assembler [ 35].

The filtered RNA-Seq data were used for de novo transcriptome assembly using the Trinity pipeline with default parameters.

Read pairs of all tissue libraries were pooled and used for de novo transcriptome assembly using the Trinity (2013-02-25 release) software package [ 9].

The eight RNA-seq samples were used to perform a de novo transcriptome assembly using the Trinity pipeline (Grabherr et al. 2011; Haas et al. 2013).

Reads were quality-filtered prior to assembly to include only sequences with a Q20 value in greater than 90% of bases, and these reads were used to perform a de novo transcriptome assembly using the TRINITY (r2012_10_05) software package using default settings (Broad Institute, Boston, MA) [ 100].

Once a library of clean reads was prepared, the reads were then used for transcriptome de novo assembly using the Trinity progam (http://trinityrnaseq.sourceforge.net/).net/

The transcriptome sequences were assembled using the Trinity program.