Sentence examples for using the trinity suite from inspiring English sources

Reads were de novo assembled into contigs using the Trinity suite [ 19].

De novo assembly of high quality reads into unigenes was carried out using the Trinity suite [ 34] using the default parameters for paired end sequenced libraries.

Reads were then assembled using the Trinity suite (r20131110) [ 121], and then re-mapped to the assembly using the RSEM (v1.2.13) pipeline, with bowtie2 as the mapper [ 122, 123].

74 million sequences were generated and assembled into 96,492 contigs using the Trinity software suite.

Second, we searched for intact open reading frames (ORFs) in these filtered house finch transcripts, using the Trinity tool suite and only transcripts with predicted ORFs longer than 300 bp were kept; we define this set as the unfiltered set.

After quality filtering with Condetri (v. 2.0) [ 206] using the default setting, the reads were assembled using the Trinity RNA-seq suite [ 207, 208].

The clean reads of the three libraries were de novo assembled using the Trinity Program (V 2.2.0) with default parameters (Grabherr et al. 2011).

The transcriptome sequences were assembled using the Trinity program.

Lactate secretion was determined using the Trinity Lactate Kit (Trinity Biotech, Jamestown, NY, USA) according to the manufacturer's protocol.

The nine Illumina RNASeq data sets were assembled with Trinity [ 28] 2012-01-25p1 using trinitynity.pl wrapper and options '--bflyHeapSpace 15G' and '--no_meryl'.

De novo assembly of the clean reads was performed using the Trinity program [ 55].