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This analysis was performed in the software R® Version 3.2.0 using the stats package.
Predictors included grade, and pre-post change in spatial task (Make-a-Dice, Paper Folding, Purdue Rotations) accuracy, using the "stats" package in R version 3.1.2.
Statistical analysis was performed using the stats package in R version 2.1[37]; the code is included as Supplementary Text S3.
Statistical tests were performed using the stats package [ 58].
Hierarchical cluster analysis was performed in R using the stats package (Venables 2002).
Differences among breeding systems were modeled at G0 by ANOVA with fixed blocks and fixed breeding systems using the stats package in R: (lm viability∼block+mating)).
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Kruskal Wallis test with post hoc Dunn's test was performed using PMCMR package for R (Pohlert 2014) while correlation analyses used the stats package for R (R 2015).
For all of the statistical tests, we used the stats package for R [ 19].
The p-value was corrected for multiple testing using the False Discovery Rate (FDR) using the Stats R package.
Linear regressions between hybridization intensities and actual nucleotide similarities were done for each microarray while excluding nonhybridized probe noises (empirically determined to be below 80% genomic DNA-probe match) by using the stats R package (R Development Core Team 2009).
All proportional analyses were performed using the Stats Direct® statistical software package version 2.7.9 and Stata® version 12 for the meta-analyses of mean values.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com