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The statistical analyses have been performed using the statistical suite StatSoft (2011) Statistica (data analysis software system) version 10.0.
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Data were analysed using the statistical methods available in the Partek® Genomic Suite 6.5 (Partek Incorporated, St Louis, Missouri, USA).
The regression analyses used the statistical program 2L from the BMDP suite [ 11].
Data processing and statistical analysis were carried out using the R statistical software suite [ 15] and custom scripts written in Perl.
For higher sampling rates, larger values of n are needed to achieve verified randomness using the NIST statistical test suite [47].
We then carried out an in silico reconstruction of the transcriptional profile of X. laevis metamorphic genes using the IDEG suite of statistical tests.
All the statistical analysis was done using the R suite [ 92] and a library of ad hoc Perl scripts developed by us.
Statistical analysis was performed using the GenePattern suite of programs [13].
HMMs were constructed using the HMMER suite of programs to create a statistical profile of EBNA-1 binding sequences [19].
All calculations were done using the Bioconductor suite in the R software package for statistical analysis [ 4].
Statistical analysis of the data was done using the SPSS suite.
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