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All statistical analyses were performed using the statistical environment R version 2.14.1 (Amsterdam, The Netherlands) and PASW statistics 18.
Figures were plotted using the statistical environment R [23].
Using the matrices, {pij}, the analysis was performed by using the statistical environment R [31], by use of a set of functions developed to such effect.
T-tests were performed on total M-values using biological triplicates for each condition and standard P-values were then corrected by the Benjamini-Hochberg FDR method using the statistical environment "R".
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For statistical analysis we used the statistical environment R 2.8.1 [ 24].
All statistical analyses were performed using the statistical software environment R [42].
All analyses were performed using the statistical software environment R 2.10.1.
Statistical analyses were performed using the statistical computing environment R [ 26].
All statistical analysis was done using the statistical computer environment R [ 32].
Statistical analysis has been performed using the statistical software environment R [ 14].
We computed the enrichment P value as using the statistical computing environment R (R Development Core Team 2011).
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