Sentence examples for using the standalone tblastx from inspiring English sources

Nucleotide sequences of all the F. hepatica transcripts were searched against nucleotide sequences of the Dugesiidae species and protein sequences of C. elegans using the standalone tblastx and blastx, respectively (E value < 10−5).

These traces were downloaded and searched against our dataset using the standalone BLAST package (TBLASTx and TBLASTn algorithms with default gap costs and the BLOSUM62 matrix).

Protein family analyses were done using the standalone versions of PANTHER [ 67].

Computational predictions of localization were performed using the standalone version of PSORTb v.2.0 [ 31].

Sequences were aligned and their pairwise divergence calculated using the standalone version of BlastAlign (Belshaw and Katzourakis 2005).

It operates by querying SaddleSum locally (using the standalone version) or remotely (through an HTTP request to a web server).

For batch mode analysis, prefer to use the standalone GUI version.

To predict signal peptide cut sites, we used the standalone version of SignalP 3.0 [ 19, 36, 20].

To identify the putative new miRNA targets we used the standalone-based UEA sRNA toolkit-Plant target prediction pipeline.

Nevertheless, the deduced amino acid sequence A matched the NS1 gene of MVC (40% identity, E = 8×10−14) and HBoV2 (44% identity, E = 4×10−6) using the tBLASTx algorithm.

Likewise, the deduced amino acid sequence B matched the VP1 gene of MVC (57% identity, E = 6×10−34) and HBoV (68% identity, E = 1×10−28) using the tBLASTx algorithm.