Sentence examples for using the species tree from inspiring English sources

We repeated all the selection tests using the species tree topology and obtained similar results as the putative gene tree.

Using the species tree, we encountered 19 apparent homoplasies but none when we used the gene tree (File S5).

Using the species tree topology ((M.

Additional file 6: Molecular evolutionary analysis of OryzaTPS1 using the species tree.

Age groups were defined using the species tree of Baldauf [ 66].

Using the species tree as the foundation, we characterized the phylogenetic distribution of orthologous gene clusters among the apicomplexan genomes analyzed.

All analyses for the UCP2 and UCP3 loci used the species tree.

Across ReEVOLVER, PAML and HyPhy, we used the species tree of primates described in [ 18].

We used the Species Tree Analysis Web Server [ 52] to run all STAR and MP-EST analyses.

We use the species tree representing the relationships between the five herpes virus species given by (McGeoch and Gatherer, 2005; McGeoch et al., 2006).

We used the species tree approach (*B EAST, [ 66]) implemented in BEAST 1.5.4 [ 55, 60], to estimate the relationship among the three subspecies (albigula, debilis and rabai).