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Clustering and assessments were performed using the software implementation of Bailly-Bechet et al. (2006).
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Start Using the software.
Practice using the software.
The software implementation uses complementary line-shifting to by-pass the adaptivity of the template.
However the performance of these software on Affymetrix 500 k data has not been intensively tested and for some the software implementation is tedious to use.
The software implementation is done in C using protocol libraries.
The homeostatic model assessment of insulin resistance (HOMA2-IR) was calculated using a software implementation of the HOMA2 model developed by the Diabetes Trials Unit, University of Oxford (http://www.dtu.ox.ac.uk/homacalculator/). Results are shown with mean (s.d).
In this work, we propose a complexity measure, called computational complexity of M, denoted by TCC(M), that more adequately reflects the computational effort of decoding a convolutional code using a software implementation of the VA.
Anyone using the data exchange specification can validate their TMA files using a software implementation written in Perl and distributed as a supplemental file with this publication.
To facilitate that goal, a repository of open-source software containing the software implementations for solutions used in each paper would be extremely beneficial.
We further demonstrate advantages of this approach using our software implementation, mmHG-Finder, which is publicly available, to study PWM motifs in several datasets.
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