Sentence examples for using the software T-Coffee from inspiring English sources

The alignment was done using the software T-Coffee [35].

All of the stem-loop sequences of the MIR159 family were aligned using the software T-coffee version 6.06 [ 68].

The sequences were aligned using the program T-coffee (EBI) and formatted with ESPRIPT (Gouet et al., 1999 ).

12S and 16S ribosomal RNA genes were aligned using the program T-COFFEE [ 24] incorporating information from secondary structure [ 25].

The predicted proteins of the planarian MEX3 homologs were aligned using the program T-coffee along with MEX3 homologs from other species (Notredame et al., 2000).

CTD+ domain sequences were aligned with MAFFT L-INSI [ 66], ProbCons, Muscle and T-coffee and subsequently combined into an optimal alignment using the combiner function of T-coffee [ 67].

Calculations of sequence similarity and the informativeness of sequences was done using the T-Coffee package [43].

Practice using the software.

Start Using the software.

The orthologous regions were realigned using the T-coffee algorithm, and then submitted to Phylogibbs.

Protein alignments were created using the T-COFFEE algorithm and EST searches conducted using UniGene.