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Domains were identified using the SMART program.
The seven transmembrane domains were predicted using the SMART program [ 34].
Structural motif annotation was performed using the SMART program mentioned above.
The structure of chicken TLRs was predicted using the SMART program [ 54] to analyse full length amino acid sequences.
We have derived the aa sequence of the corresponding ORFs and predicted the whole sequence architecture by computer analysis using the SMART program [ 34, 35]).
For FKBPs with a multiple (two or more) FKBP domain, the most conserved domain obtained from the analysis using the SMART program was used.
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The conserved domains were analyzed using the SMART web program, Genbank BLAST program, and other literature [ 16- 22].
Protein domain prediction in the amino acid sequence translated from cDNA and genome sequences using the SMART web program [21] showed the presence of transmembrane regions in the protein products of the assumed genes represented by PC_206947, PC_207214, PC_207218.
Seed-related traits were measured by using the Smart Grain program [ 44].
The presence of DBDs and coiled-coil structures were determined using the SMART and MEME programs [ 48– 50].
The domain search of deduced amino acid sequences was analyzed using the SMART web and the NCBI protein blast program.
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