Sentence examples for using the smart domain from inspiring English sources

In order to ensure that sequences were not fragments or labeled incorrectly by protein family, sequences were analyzed using the SMART domain recognition software on the UniProtKB website.

Domain architecture similarity was assessed using the SMART domain recognition tool (Schultz et al., 1998).

No additional structural or enzymatic domains could be identified in the protein sequence using the SMART domain research server [ 20].

Each identified Dsh ortholog was analyzed for protein domains using the SMART protein domain analysis website (http://smart.embl-heidelberg.de), used in normal mode (Letunic et al. 2012).

All retrieved non-redundant sequences were collected and subjected to domain analysis by using the SMART (http://smart.embl-heidelberg.de/) and Conserved Domain Database (CDD) (http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi/) programmes.

Protein domain prediction using the SMART database [ 27] identified a single SCP/TAPS domain (SMART accession number: SM00198) in all but one SmVAL transcript, with SmVAL11 containing two.

We have therefore searched all complete formin sequences for a collection of known protein domains from the SMART and Pfam databases using the SMART search tool [ 28, 29].

Analytical gel filtration analysis was done by Sephadex G200 column chromatography using cell lysates containing GFP-GAPA or Sephadex G75 column chromatography for the purified GRD domain using the SMART system (GE Healthcare).

In order to assess the conservation degree of PSLs, we predicted and compared the secondary structure of FHA and PINc domains using the SMART (http://smart.embl-heidelberg.de) and PSIPRED (http://bioinf.cs.ucl.ac.uk/psipred) tools.

Since most LMs are known to be in natively disordered polypeptide segments (Fuxreiter et al., 2007), the KEPE matches were also evaluated for a clash with known globular domains using the SMART server (Letunic et al., 2006) or in predicted globular structure reported by IUPred (Dosztanyi et al., 2005).

Structure analyses of the obtained STKs were performed using the SMART [ 27, 61] and CDD (Conserved Domains Database) [ 44, 62] databases, relying on hidden Markov models and Reverse Position-Specific BLAST separately.