Sentence examples for using the smart database from inspiring English sources

Domain architecture analysis was performed using the SMART database application (http://smart.embl-heidelberg.de/).

The domain architecture of each protein is shown, as inferred using the SMART database.

We analyzed the rearrangement of protein domains resulting from the 6 in-frame gene fusions using the SMART database [ 42].

Domain architecture analysis was carried out for the four proteins of Figure 1 using the SMART database default parameters.

Protein domain prediction using the SMART database [ 27] identified a single SCP/TAPS domain (SMART accession number: SM00198) in all but one SmVAL transcript, with SmVAL11 containing two.

Third, as a final quality check, we confirmed the presence of the AP2 domain in every AP2/ERF superfamily transcription factor using the SMART database (http://smart.embl-heidelberg.de/) [ 66].

Protein domain boundaries were identified using the SMART protein prediction database (http://smart.embl-heidelberg.de/).

Even at very low stringency some LRRs in proteins with known numbers of such repeats were missed by HMMpfam using the SMART and Pfam databases.

Using the SMART and Pfam databases, the C-terminal domains in chickpea F-box genes were identified, based on which, the F-box genes were classified into 10 subfamilies.

We have therefore searched all complete formin sequences for a collection of known protein domains from the SMART and Pfam databases using the SMART search tool [ 28, 29].

Structure analyses of the obtained STKs were performed using the SMART [ 27, 61] and CDD (Conserved Domains Database) [ 44, 62] databases, relying on hidden Markov models and Reverse Position-Specific BLAST separately.