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Time series are encoded using the settings described above ((L=35) windows of length (ell=6) hours sliding every (delta=20) minutes).
Images were made with a 256 × 256 matrix size, using the settings described above.
Stomatal conductance was measured over time with the LI-6400XT photosynthesissystemsis system using the settings described above.
The cells were washed gently in 500 μl 1× PBS and viewed via confocal microscopy using the settings described above for detection of EGFP and chloroplast autofluorescence.
Four independent international laboratories acquired their own SWATH maps using the settings described above: (1) Antony Purcell, Monash University; (2) Nicola Ternette, University of Oxford; (3) Miguel Marcilla, Spanish National Biotechnology Center; (4) Ruedi Aebersold, ETH-Zurich.
We used the R package ' rrBLUP' (Endelman, 2011) to fit the RR-BLUP model, and the ' BLR' package (Pérez et al., 2010) to fit the BL mode using the settings described in González-Camacho et al. (2012).
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We analyzed all the networks in Table 1 using FANMOD with the settings described above.
Cells were sorted using the settings previously described [ 17] and analyzed by analytical flow cytometry as described below.
During these procedures the animal breathed with pressure support using the settings as described above.
During the clamping period, both lungs were maintained on mechanical ventilation using the settings previously described [ 16].
Analysis of recombinant cells was performed with a Leica TCS SP2 confocal laser-scanning microscope using the settings as described [ 17] for the GFP and chlorophyll fluorescence.
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using the tests described
using the microdata described
using the principles described
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using the strategies described
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using the spectrofluorometers described
using the sequences described
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using the criteria described
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