The Velvet de novo assembled contigs were MegaBLAST searched against these LCNG sets using the settings above.
The mapped reads were counted with htseq-count 0.5.1p1 using the settings union and strandedness (http://www-huber.embl.de/users/anders/HTSeq/doc/count.html, last accessed October 18 , 2013.
Both [C]flumazenil and (R -[C]PK11195 data sets weR -[C]PK11195very well using the settings foundata the setslation study.
Zero values were set to −70 dBm, the limit of detection of the measurements using the settings we applied in the field.
The organelle specific probe fluorescence was monitored using the settings recommended by the manufacturer.
Once you've plugged in Airport Express, you can add it to your Wi-Fi network using the settings on your PC.
Apex masses were submitted to the BinBase algorithm using the settings: validity of chromatogram (<10 peaks with intensity >107 counts per s), unbiased retention index marker detection (MS similarity >800, validity of intensity range for high-m/z marker ions), retention index calculation by 5th-order polynomial regression.
The clustering procedure was repeated on these selected structures: the final number of clusters is 7 with 0.7 R2, clustering strain 1.020, for model 1; and 5 with 0.8 R2, clustering strain 1.007, for model 2. The binding sites of the representative structures were analyzed with SiteMap (version 3.7, Schrödinger, LLC, New York, NY, 2015), using the settings described above.
Time series are encoded using the settings described above ((L=35) windows of length (ell=6) hours sliding every (delta=20) minutes).
Fig. 15 a Theoretical (dashed lines) and estimated (solid lines) models of the mean 1D profiles obtained using the settings shown in Fig. 14.
For problems whose Cholesky Decomposition does not fit into memory we use the Conjugate Gradient Method together with ILUPACK [17] as a preconditioner (using the settings of Section 6.1).
