Sentence examples for using the sequence viewer from inspiring English sources

The locations and the DNA lengths of introns were identified using the sequence viewer on the NCBI web site (http://www.ncbi.nlm.nih.gov/).nih.gov/

Processing and correction of sequences were performed using the sequence viewer and alignment editor BioEdit.

The resulting multiple alignments were visualized and annotated using the sequence alignment protocol in CLC sequence viewer (CLCBIO, Aarhus, Denmark).

Sequences were manually aligned using the integrated sequence viewer in editor mode and reference structures were retrieved from NCBI structure database [ 32].

Sequences were quality controlled and aligned using the CLC sequence viewer v. 6.3 (CLC bio) and Quantitation tool for Methylation Analysis software (RIKEN).

Protein alignments were performed using the CLC sequence viewer (CLC bio, a QIAGEN Company).

To select genes that harbor the RNT-1 binding sites, R(G/T ACCRCA, in their promoter regions, we identified the numbers and locations of the RNT-1 binding sites in the 2-kb region of the promoters by visual inspection using the CLC sequence viewer 6 (http://www.clcbio.com).

Sequences were assembled using DNA baser and trimmed to the mature peptide using CLC sequence viewer 6.

In addition, intron positions and frames were determined for the Shank proteins using NCBI sequence viewer (human and fly proteins) or JGI browse tool (proteins from Capitella, Nematostella and Monosiga) and the alignment procedure described above.

The syntenic core genome of Cronobacter was determined using the SEED viewer sequence based comparative genomics tool.

MAT1-2 matype type regions immediately 5 kb upstream and downstream were retrieved from the sequenced genome using Artemis v12.0 sequence viewer.