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Public LongSAGE libraries were downloaded from GEO177 and imported into the MySQL database using the same normalisation and linker removal script as for libraries sequenced in-house.
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Direct replication of the findings at the four top-ranked signals was pursued in the nine NTR cancer-discordant MZ pairs using the same quality control, normalisation, and analysis pipeline as the original discovery analysis in 41 MZ pairs.
Before submission to the database, analysis files were all processed using the same software program and normalisation algorithm.
Since spots are only compared to negative controls on the same array using the same channel, our method allows comparisons of microarrays from different experiments without any normalisation.
Using the same sample sizes, assessing RNA integrity and equalising RNA concentrations prior to RT are some of the basic normalisation steps in QPCR [ 5].
PET images were reconstructed using two different algorithms both of which used the CT for attenuation correction and the same normalisation correction factors.
Then the same normalisation procedure as used in the previous work [ 15] was applied to the microarray data to reduce experimental noises.
Then the same normalisation procedure as used in Bacon et al. (2007) [ 20] was applied to the microarray data to reduce experimental noises.
Use the same procedure.
Use the same command.
Use the same list.
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