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Also, I found quite a few different species — climbing rats, monkeys, opossums — using the same branches to get from one place to the next, which may indicate that there are some common features that animals select when they choose a path in the canopy.
So then, for 3 neurites, I could then treat all the neurite-soma connections as a single branch point at the edge of the soma (i.e. half the soma's full-length axial resistance away from the soma's central [or "internal node"] voltage, Vm), branching into 1 axonal and 2 dendritic compartments, using the same branching math that would be used for a dendritic branch into 3 subtrees, right?
We calculate lower bounds and provably optimal solutions of both, CUT F and CUT R models using the same branch-and-cut framework described below.
Mr. Fisher's exquisite metal work also can be seen in the staircase off the dining room, which uses the same branch- and twig- motif for its striking balustrade.
Using the same program, branch attachment frequencies were calculated for clades with low support values (BS < 90) using 1000 bootstrap trees and the ML topology as well as the first 2000 BI topologies (after burn-in) and the BI topology.
The phylogenetic trees were drawn to scale, using the same units for branch lengths and the evolutionary distances used to infer the phylogenetic trees.
Results of cluster analyses of distances (d G ) obtained using spiddos data from three independent GP experiments using the same samples from five branches (Additional file 4: Table S2) are shown in Figure 1A-C; clustering results based on an average of the three trials are shown in Figure 1D.
For each treatment and each time point, TUNEL-labelled nuclei were counted in coral sections obtained from 6 coral branches (6 sections were analysed and averaged per coral branch), using the same magnification (x40) and compared to the total number of host cells in the same image field to obtain a percentage of TUNEL-positive host cells.
ML and Bayesian phylogenetic reconstructions were carried out using the same parameters as above, although branch lengths were not estimated because several GenBank specimens contained only partial sequence data.
To eliminate the possibility of LBA artifacts [ 44], we conducted phylogenetic analyses based on a dataset that excluded the sequence data of the long branches using the same analysis procedures.
Sequences were simulated based on trees with collapsed branches using the same evolutionary model and substitution parameters obtained for the original dataset with the program evolver of PAML v.4.4 [ 99, 100].
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