Using the same strategy we identified 147 and 131 ancestral genes potentially lost by pseudogenization by X. fastidiosa and X. albilineans, respectively (Additional files 2 and 3).
Using the same rationale as above, we again favor the ancestral reconstruction obtain with RadConsAA model, over that obtained under the MGd Nd S model.
Therefore there is a need to compare all methods using the same data sets and evaluate their efficiencies and accuracies in estimating ancestral proportions for admixed populations.
The images (Figs 2, 3, 4, 5, 6) were produced using the same primary beam energy (30 keV) but with a different vacuum setting, a different detector, or an absence of coating for the same Ancestral Pueblo black-on-white pottery sherd.
The other images (Figs. 2, 3, 4, 5 and 6) were compared using the same primary beam energy as used in Fig. 4 (30 keV) but with a different vacuum setting, a different detector, or an absence of coating for the same Ancestral Pueblo black-on-white pottery sherd.
Ancestral base composition was estimated independently for each class in each gene using the same procedure as indicated above.
Ancestral GC3 was then estimated for each class in each gene independently using the same procedure as previously (see Materials and Methods).
Using the same peach EST datasets and their Arabidopsis homologs, we also detected conserved syntenic regions in the pseudo-ancestral Arabidopsis genome.
Using the same process, continue.
These results are consistent with previous chemostat studies initiated with the same ancestral strain using identical culture conditions (Notley-McRobb et al. 2003), thus this single population was typical of other previous shorter-run chemostat cultures.
