Sentence examples for using the sam tool from inspiring English sources

To identify the pseudogenes with the most strong subtype-specific expression profiles, we performed a multi-class differential expression analysis using the SAM tool [ 26].

Identical RADseq tags and those with one or two mismatches (SNPs or 1 2 bp InDels), were aligned using Novoalign software (http://www.novocraft.com/), and the SAM output file was converted to BAM format and sorted using the SAM tools suite [ 34].

Unmapped reads were then removed using the Filter SAM tool.

Add stamps using the stamp tool.

The SAM tool was applied to identify differentially expressed genes, which then represented our set of data-driven queries.

The present study uses the SAM 2005 constructed by IFPRI (Dorosh and Thurlow 2009) for Bangladesh and this is the latest SAM constructed for Bangladesh economy.

The SAM file produced by Bowtie was processed using SAM tools (Li et al. 2009) to obtain the mean coverage of the positions covered by reads.

The resulting SAM files were sorted and compressed into BAM files by using the MergeSamFiles tool which is part of the Picard toolkit [ 12].

Start using the 'blend' tool.

Draw using the Eraser tool.

Using the Circle Selection tool, select the sphere.