Sentence examples for using the sam program from inspiring English sources

The statistical significance of transcriptional variations was assessed using the SAM program with a threshold of 1.5 [ 11].

Then, normalized N0 means were compared between infected and non-infected samples using the SAM program as for microarrays analyses and fold changes were calculated from the quantitative RT-PCR measurements.

The normalized values were used for further comparison of each of the stress condition samples with the 4 control samples and for statistical validations of the variations using the SAM program [ 11].

To identify a signature to distinguish ICC from NIBD, miRNA with more than a 2-fold change and low P values were selected from the 158 miRNAs by using the SAM program (FDR = 0) and t test.

Array date was screened (using a cut-off of at least one p value for each probe ID <0.2), normalised (global geometric mean) using the MaxD/View-Program and analysed using the SAM-Program [ 29, 30].

The generated alignment files were examined for general statistics, e.g., number of mapped reads, coverage, insert-size distribution using the sam-stats program from the ea-utils package, and custom scripts (Aronesty 2011).

The microarray GSE4757 was analyzed using Significance Analysis of Microarrays (SAM) to identify significantly expressed AD related genes in R using the SAM 5.0 package from [ 40].

However, the problem is diminished when using the SAM analysis technique.

Using the SAM-derived gene lists, average linkage hierarchical cluster analysis was conducted using Pearson correlation in the Cluster program and the data were visualized in Treeview [ 8, 9].

Differentially transcribed genes across samples were identified using the program SAM (Significance Analysis of Microarrays) version 4.0 [ 63].

The present study uses the SAM 2005 constructed by IFPRI (Dorosh and Thurlow 2009) for Bangladesh and this is the latest SAM constructed for Bangladesh economy.