Sentence examples for using the repeatmasker version from inspiring English sources

Repetitive sequences were identified using the RepeatMasker (version open-3.1.6)[ 44].

Repetitive sequences were identified using the RepeatMasker (version open-3.1.6) [ 31] and GIRI Repbase [ 47].

We also used the RepeatMasker (version 3.3.0) (http://repeatmasker.org) with the repeat library (RepBase 16.01) to predict known translocation elements and applied the Tandem Repeat Finder to identify tandem repeats.

Repeat sequences were annotated from the SSB draft genome scaffolds using the RepeatMasker program version 3.0 with default parameters (20).

To evaluate whether annotated miRNAs are located on genomic repeats and to discover the nature of these repeats, novel and downloaded miRNA precursors from the miRBase release 20 were analyzed using the RepeatMasker script, version 3.2.8 (http://www.repeatmasker.org/).org/

Classification of L1 subfamilies was carried out using the RepeatMasker program (provided by Ensembl) and a customised version of the monomer search modules of L1Xplorer [16], which uses Matcher from the EMBOSS package and template sequences from published reports.

Coordinates for all nLTR-RT elements were extracted from the February 2006 version of the stickleback genome (v1.0) using the RepeatMasker table available from the UCSC genome browser (www.genome.ucsc.edu).ucsc.edu

Whole genome shotgun sequences were masked for mammalian-specific repeats and low complexity regions using RepeatMasker version open-3.1.7 [ 33] with options -xsmall, -species pig, default sensitivity and using the RepeatMasker Database release 20071204.

Repeat elements were masked using the RepeatMasker [ 51].

Transposon sequences were searched using the RepeatMasker and RepeatProteinMasker softwares.

Genome wide repeats were analysed using the RepeatMasker programme [ 96].